SFB 1243 Cancer Evolution

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Marr, Carsten

Dr. Carsten Marr

Helmholtz Zentrum München, Institute of Computational Biology


Helmholtz Zentrum München
German Research Center for Environmental health
Institute of Computational Biology
Ingolstädter Landstr. 1
85764 Neuherberg

Phone: +49 (0)89 3187-2158

Website: Website ICB
Website: Quantitative Single Cell Dynamics

Work group

Associated Member (since Jan 2016), affiliated with A17 Computational models of neoplasmic heterogeneities and lineage choice

10 Major publications related to project

Blasi, T., Feller, C., Feigelman, J., Hasenauer, J., Imhof, A., Theis, F. J., Becker, P. B., Marr, C. (2016). Combinatorial Histone Acetylation Patterns Are Generated by Motif-Specific Reactions. Cell Systems, 2(1), 49–58. doi.org/10.1016/j.cels.2016.01.002

Angerer, P., Haghverdi, L., Büttner, M., Theis, F. J., Marr, C., & Buettner, F. (2015). destiny – diffusion maps for large-scale single-cell data in R. Bioinformatics, 10.1093/bioinformatics/btv715

Filipczyk, A., Marr, C., Hastreiter, S., Feigelman, J., Schwarzfischer, M., Hoppe, P. S., et al. (2015). Network plasticity of pluripotency transcription factors in embryonic stem cells. Nature Cell Biology, 17(10), 1235–1246. http://doi.org/10.1038/ncb3237

Feigelman, J., Theis, F. J., & Marr, C. (2014). MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data, 15(1), 240. http://doi.org/10.1186/1471-2105-15-240

Preusse, M., Marr, C., Saunders, S., Maticzka, D., Lickert, H., Backofen, R., & Theis, F. J. (2015). SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins. RNA Biology, 12(9), 998–1009. http://doi.org/10.1080/15476286.2015.1068496

Strasser, M., Feigelman, J., Theis, F. J., & Marr, C. (2015). Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy. BMC Systems Biology, 1–26.

Strasser, M., Theis, F. J., & Marr, C. (2012). Stability and Multiattractor Dynamics of a Toggle Switch Based on a Two-Stage Model of Stochastic Gene Expression, 102(1), 19–29.

Marr, C., Strasser, M., Schwarzfischer, M., Schroeder, T., & Theis, F. J. (2012). Multi-scale modeling of GMP differentiation based on single-cell genealogies., 279(18), 3488–3500. http://doi.org/10.1111/j.1742-4658.2012.08664.x

Krumsiek, J., Marr, C., Schroeder, T., & Theis, F. J. (2011). Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network. PloS One, 6(8), e22649. http://doi.org/10.1371/journal.pone.0022649

Marr, C., Theis, F. J., Liebovitch, L. S., & Hütt, M.-T. (2010). Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli. PLoS Computational Biology, 6(7), e1000836. http://doi.org/10.1371/journal.pcbi.1000836