Contact
German Research Center for Environmental health
Institute of Computational Biology
Ingolstädter Landstr. 1
85764 Neuherberg
Phone:
+49 (0)89 3187-2158
Email:
carsten.marr@helmholtz-muenchen.de
Website:
Website ICB
Website:
Quantitative Single Cell Dynamics
Work group
Associated Member (since Jan 2016), affiliated with A17 Computational models of neoplasmic heterogeneities and lineage choice
10 Major publications related to project
Blasi, T., Feller, C., Feigelman, J., Hasenauer, J., Imhof, A., Theis, F. J., Becker, P. B., Marr, C. (2016). Combinatorial Histone Acetylation Patterns Are Generated by Motif-Specific Reactions. Cell Systems, 2(1), 49–58. doi.org/10.1016/j.cels.2016.01.002
Angerer, P., Haghverdi, L., Büttner, M., Theis, F. J., Marr, C., & Buettner, F. (2015). destiny – diffusion maps for large-scale single-cell data in R. Bioinformatics, 10.1093/bioinformatics/btv715
Filipczyk, A., Marr, C., Hastreiter, S., Feigelman, J., Schwarzfischer, M., Hoppe, P. S., et al. (2015). Network plasticity of pluripotency transcription factors in embryonic stem cells. Nature Cell Biology, 17(10), 1235–1246. http://doi.org/10.1038/ncb3237
Feigelman, J., Theis, F. J., & Marr, C. (2014). MCA: Multiresolution Correlation Analysis, a graphical tool for subpopulation identification in single-cell gene expression data, 15(1), 240. http://doi.org/10.1186/1471-2105-15-240
Preusse, M., Marr, C., Saunders, S., Maticzka, D., Lickert, H., Backofen, R., & Theis, F. J. (2015). SimiRa: A tool to identify coregulation between microRNAs and RNA-binding proteins. RNA Biology, 12(9), 998–1009. http://doi.org/10.1080/15476286.2015.1068496
Strasser, M., Feigelman, J., Theis, F. J., & Marr, C. (2015). Inference of spatiotemporal effects on cellular state transitions from time-lapse microscopy. BMC Systems Biology, 1–26.
Strasser, M., Theis, F. J., & Marr, C. (2012). Stability and Multiattractor Dynamics of a Toggle Switch Based on a Two-Stage Model of Stochastic Gene Expression, 102(1), 19–29.
Marr, C., Strasser, M., Schwarzfischer, M., Schroeder, T., & Theis, F. J. (2012). Multi-scale modeling of GMP differentiation based on single-cell genealogies., 279(18), 3488–3500. http://doi.org/10.1111/j.1742-4658.2012.08664.x
Krumsiek, J., Marr, C., Schroeder, T., & Theis, F. J. (2011). Hierarchical differentiation of myeloid progenitors is encoded in the transcription factor network. PloS One, 6(8), e22649. http://doi.org/10.1371/journal.pone.0022649
Marr, C., Theis, F. J., Liebovitch, L. S., & Hütt, M.-T. (2010). Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli. PLoS Computational Biology, 6(7), e1000836. http://doi.org/10.1371/journal.pcbi.1000836